host strain e coli b Search Results


host strain e coli b  (ATCC)
99
ATCC host strain e coli b
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Host Strain E Coli B, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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t7 rna polymerase  (New England Biolabs)
98
New England Biolabs t7 rna polymerase
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
T7 Rna Polymerase, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 98/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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plasmid pmh24  (IBA GmbH)
90
IBA GmbH plasmid pmh24
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Plasmid Pmh24, supplied by IBA GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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escherichia coli castellani and chalmers  (ATCC)
99
ATCC escherichia coli castellani and chalmers
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Escherichia Coli Castellani And Chalmers, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tryptic soy broth tsb  (Becton Dickinson)
90
Becton Dickinson tryptic soy broth tsb
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Tryptic Soy Broth Tsb, supplied by Becton Dickinson, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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plasmid pask-iba6  (IBA GmbH)
90
IBA GmbH plasmid pask-iba6
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Plasmid Pask Iba6, supplied by IBA GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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t7 express competent e. coli  (New England Biolabs)
96
New England Biolabs t7 express competent e. coli
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
T7 Express Competent E. Coli, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bamhi  (New England Biolabs)
99
New England Biolabs bamhi
a Types and proportions of verified defense systems <t>and</t> <t>candidate</t> defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia <t>coli</t> <t>B</t> (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .
Bamhi, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


a Types and proportions of verified defense systems and candidate defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia coli B (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .

Journal: Nature Communications

Article Title: Co-occurrence of diverse defense systems shapes complex microbe-virus relationships in deep-sea cold seeps

doi: 10.1038/s41467-025-68174-6

Figure Lengend Snippet: a Types and proportions of verified defense systems and candidate defense systems in cold seep microbial genomes, including their primary mechanisms of action and corresponding system counts. “DS” denotes defense systems and “num” represents the total count. “Type num” refers to the number of distinct defense system types within each mechanism category. b Plaque assays demonstrating phage infection of Escherichia coli B (ATCC ® 11303™) transformed with plasmids carrying various candidate defense systems or an empty vector (control) using a small volume drop method. The bacteria described above were mixed in the molten agar matrix and ten-fold serial dilutions of phages T7, T5, and T4 were spotted onto bacterial lawns. All the assays are repeated at least 3 times with similar results. Predicted protein domains of the tested systems are shown on the right. Detailed data on annotated defense systems are provided in Supplementary Data – .

Article Snippet: Recombinant vectors containing these candidate systems were transformed into the host strain E. coli B (ATCC ® 11303TM), which naturally lacks these systems.

Techniques: Infection, Transformation Assay, Plasmid Preparation, Control, Bacteria